Download

Before downloading, please read the license information.

Java Runtime Environment

Before you'll be able to use BicOverlapper, you'll need to download de Java Runtime Environment (JRE). Get the newest version at http://java.com

NOTE: BicOverlapper is designed to work with JRE 1.6, it won't work with older versions.

R and BioConductor

From version 1.4 on, BicOverlapper uses R console (2.8) and BioConductor in order to perform biclustering analyses, retrieve annotations, perform statistical signifincance tests and other calculations. Please read the user guide included with the tool for further details.

Download

Older versions are here for record history and are not recommended to download. Please download the latest stable version:

download
(version)

date
main changes
1.4
july 2009

Integration of biclustering algorithms
Integration of gene annotations

Install & Run

BicOverlapper should run correctly under any Operating System that supports Java 1.6 and has at least 1GB of RAM and 50MB of disk space.

To install just download the .rar file, uncompress it and:

  • Windows: double click on bicoverlapper.bat, or type bicoverlapper.bat in the command line.
  • Linux: open a terminal and give execution privileges to BicOverlapper with "chmod +x bicoverlapper.bat". Run it with "./bicoverlapper.bat"
  • MacOS X: same as Linux

For more information about BicOverlapper installation and requirements, please read the user guide